Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs9446964 | chr6:74342696 | G/T | 3.24E-5 | 412 | 12.03 | 13.12 | 17.13 | KM Plot |
| HNSC | rs9446970 | chr6:74370066 | T/C | 1.72E-5 | 409 | 6.47 | 13.43 | 17.1 | KM Plot |
| HNSC | rs946220 | chr1:113737673 | A/C | 7.12E-6 | 412 | 16.33 | 17.07 | 6.65 | KM Plot |
| HNSC | rs948176 | chr11:113204481 | A/G | 5.25E-6 | 409 | 17.53 | 15.2 | 11.93 | KM Plot |
| HNSC | rs9627359 | chr22:46664431 | C/G | 2.44E-5 | 408 | 16.87 | 16.8 | 11.7 | KM Plot |
| HNSC | rs9627360 | chr22:46664638 | G/A | 2.85E-5 | 409 | 16.65 | 16.8 | 11.7 | KM Plot |
| HNSC | rs9627363 | chr22:46666161 | T/C | 3.51E-6 | 411 | 16.43 | 16.8 | 10.77 | KM Plot |
| HNSC | rs9627387 | chr22:46684678 | A/G | 3.49E-5 | 411 | 16.35 | 18.67 | 11.12 | KM Plot |
| HNSC | rs9630149 | chr11:34989826 | T/G | 1.41E-5 | 412 | 16.33 | 16.3 | 9.2 | KM Plot |
| HNSC | rs9672450 | chr15:101589337 | C/T | 5.65E-8 | 412 | 16.25 | 16.33 | 3 | KM Plot |
| HNSC | rs9767151 | chr6:155556354 | G/A | 7.46E-5 | 395 | 12.67 | 18.27 | 16.17 | KM Plot |
| HNSC | rs9792094 | chr7:76209799 | A/G | 1.29E-10 | 407 | 16.37 | 14.58 | 3.95 | KM Plot |
| HNSC | rs9854608 | chr3:54887868 | C/T | 1.89E-6 | 412 | 4.75 | 15.78 | 16.65 | KM Plot |
| HNSC | rs9956520 | chr18:76494378 | C/T | 6.22E-8 | 412 | 17.37 | 12.07 | 3 | KM Plot |
| KICH | rs10774443 | chr12:6848212 | G/A | 7.29E-7 | 64 | 66.78 | 50.67 | 16.9 | KM Plot |